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Meal Prep Breakfast Egg Muffins Recipe

If you’re looking for a delicious, no-fuss breakfast that you can make ahead and grab on busy mornings, you’re going to adore this Meal Prep Breakfast Egg Muffins Recipe. I absolutely love how these egg muffins turn out—fluffy, packed with veggies and savory sausage, and perfectly portioned to keep you fueled all week. Trust me, once you try this, your mornings just might never be the same!

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Why You’ll Love This Recipe

  • Make-Ahead Convenience: Prepare a batch on Sunday and enjoy hassle-free breakfasts all week long.
  • Packed with Nutrition: Loaded with veggies, protein, and healthy fats to keep you satisfied.
  • Customizable: Easily swap ingredients to suit your taste or dietary needs.
  • Perfect Portions: Comes out as easy-to-grab muffins or meals that feel like a treat without the fuss.

Ingredients You’ll Need

The beauty of this Meal Prep Breakfast Egg Muffins Recipe is in the balance of fresh and simple ingredients that work so well together, giving you that satisfying, savory breakfast without complex prep. I always recommend using fresh veggies and quality sausage or bacon for the best flavor boost.

Flat lay of a small white ceramic bowl with golden avocado oil, a mound of fresh raw ground sausage, half a small white onion roughly chopped, half a bright red bell pepper diced, a handful of sliced white mushrooms, a small pile of vibrant green roughly chopped fresh spinach, eight whole uncracked brown eggs arranged neatly, a small white bowl filled with creamy white cottage cheese, a small white bowl heaped with shredded bright orange cheddar cheese, and a small scattering of mixed garlic powder, paprika, salt, and black pepper spices, all placed symmetrically on a clean white marble surface, soft natural light, photo taken with an iPhone, professional food photography style, fresh ingredients, white ceramic bowls, no bottles, no duplicates, no utensils, no packaging --ar 2:3 --v 7 --p m7354615311229779997 - Meal Prep Breakfast Egg Muffins, healthy breakfast ideas, make-ahead egg muffins, easy breakfast recipes, nutritious breakfast meal prep
  • Avocado Oil: I love avocado oil because it has a high smoke point and adds a subtle richness without overpowering the flavors.
  • Ground Sausage or Bacon: Sausage adds a savory punch, but using bacon gives a smoky twist—either way, cook it fully before mixing.
  • Onion: Adds sweetness and depth—make sure it’s chopped finely so it cooks evenly.
  • Bell Pepper: Brings a fresh crunch and a pop of color to your muffins.
  • Sliced Mushrooms: Mushrooms add earthiness and soak up all those fantastic savory juices from the sausage.
  • Fresh Spinach: This is my go-to green here; it wilts quickly and sneaks in some greens effortlessly.
  • Eggs: The star of the show—make sure they’re fresh for the best fluffiness.
  • Cottage Cheese or Greek Yogurt or Half & Half: Adds creaminess and moisture—cottage cheese is my favorite for its high protein kick.
  • Shredded Cheddar Cheese: Melty, sharp, and comforting—essential for that classic egg muffin flavor.
  • Garlic Powder, Paprika, Salt, Pepper: The seasoning trio that ties everything together with warm, savory notes.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

One of the things I love most about this Meal Prep Breakfast Egg Muffins Recipe is how flexible it is. I often tweak it depending on what’s in my fridge or what my family is craving, and you can totally do the same!

  • Vegetarian Twist: Skip the meat and add extra mushrooms, zucchini, or even sun-dried tomatoes—I tried this once, and it was just as satisfying!
  • Dairy-Free Version: Use almond milk instead of cottage cheese/half & half and a dairy-free cheese; it still held together perfectly.
  • Spicy Kick: Add diced jalapeños or a dash of hot sauce into the egg mix for that extra zing that my husband can’t get enough of.
  • Herbs and Greens: Mix in fresh herbs like chives, parsley, or basil for a bright, fresh flavor that wakes up your palate.

How to Make Meal Prep Breakfast Egg Muffins Recipe

Step 1: Sauté Your Veggies and Meat

First up, preheat your oven to 350ºF. Heat the avocado oil in a sturdy pan over medium-high heat. Add your sausage (or pre-cooked chopped bacon), onion, bell peppers, and mushrooms. I usually sauté for about 3-4 minutes until everything softens up and looks beautifully fragrant. Then toss in the spinach just for a quick wilt—this part only takes seconds but adds that vital fresh green goodness.

Step 2: Whisk Eggs and Mix Everything Together

While the veggies cook, grab a large bowl and whisk the eggs with cottage cheese (or your chosen dairy), shredded cheddar, and the seasonings—garlic powder, paprika, salt, and pepper. Once your sausage and veggies are ready and cooled slightly, mix them into the egg mixture. Stir gently but make sure everything’s evenly combined. I find this step crucial; it ensures each bite is loaded with all those vibrant flavors.

Step 3: Bake in Muffin Tins or Containers

Grease four small oven-safe meal prep containers, muffin tins, or even a casserole dish if you prefer. Pour your mixture evenly between them. Pop them into the oven and bake for about 20-25 minutes. Use a toothpick to check doneness—it should come out clean, and the eggs will be set but still moist. Don’t rush this part—overcooked eggs can get rubbery, and undercooked eggs won’t hold their shape.

Step 4: Cool and Store for Easy Mornings

Once baked, let them cool to room temperature before sealing and refrigerating. I usually prep on Sundays, and these hold great for up to five days, making weekday breakfasts a snap. When it’s time to eat, just microwave for 35-45 seconds until heated through, and you’re good to go!

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Pro Tips for Making Meal Prep Breakfast Egg Muffins Recipe

  • Don’t Overfill Muffin Cups: I learned the hard way that filling containers too full can cause uneven cooking and spills—fill each about ¾ full for perfect muffins.
  • Cook Meats Well Ahead: Cooking the sausage or bacon thoroughly first helps prevent soggy, greasy muffins, yielding a better texture overall.
  • Use Fresh Herbs for Brightness: Adding fresh herbs at the end of mixing gives your muffins a fresh, vibrant note that really wakes up the dish.
  • Let Muffins Cool Completely: Cooling before storing prevents condensation, which can make your egg muffins soggy—patience here pays off!

How to Serve Meal Prep Breakfast Egg Muffins Recipe

Meal Prep Breakfast Egg Muffins Recipe - Serving

Garnishes

I often like to add a sprinkle of fresh chopped chives or parsley over the top just before serving—it adds a pop of color and freshness that makes these egg muffins feel a bit more special. A dollop of salsa or a spoonful of avocado also pairs beautifully if you love some heat or creaminess.

Side Dishes

For a heartier breakfast, I sometimes serve these muffins alongside fresh fruit, like berries or sliced melon, and a side of roasted sweet potatoes or crispy hash browns. This combo makes the meal balanced and satisfying without much extra effort.

Creative Ways to Present

When I’ve had friends over for brunch, I like to arrange these egg muffins on a large platter with colorful garnishes—think cherry tomatoes, microgreens, and bite-sized roasted potatoes. It turns a simple meal prep breakfast into a festive spread that everyone loves to dig into.

Make Ahead and Storage

Storing Leftovers

I store these egg muffins in airtight containers in the fridge and they stay fresh for up to five days. I’ve found it’s best to cool them completely before sealing to keep that perfect texture. This way, breakfast is just moments away even on hectic mornings.

Freezing

Freezing is a game-changer! I place cooled muffins on a baking sheet lined with parchment to freeze individually, then transfer them to a zip-top bag. They freeze beautifully and can last up to three months. Just pop them in the fridge overnight to thaw or microwave directly from frozen, adding a bit more time.

Reheating

Reheating these breakfast egg muffins is so easy! A quick 35 to 45 seconds in the microwave works perfectly for a single serving, but you can also warm them in a 300ºF oven for about 10 minutes if you want them evenly heated without drying out. I usually cover them loosely with foil for oven reheating to keep moisture locked in.

FAQs

  1. Can I make this recipe vegetarian?

    Absolutely! You can skip the sausage or bacon and pack your egg muffins with extra veggies like mushrooms, zucchini, and spinach. Adding chickpeas or tofu crumbles can also boost protein if you want to keep it hearty.

  2. How long do these egg muffins last in the fridge?

    They typically stay fresh for up to five days when stored in an airtight container. Make sure to cool them completely before refrigerating to preserve texture and flavor.

  3. Can I use other cheeses besides cheddar?

    Definitely! I’ve had great results using mozzarella, pepper jack, or even a bit of feta for a tangy twist. Just pick a cheese that melts well to keep that lovely creamy texture.

  4. Can I prepare these without a muffin tin?

    Yes, you can use small glass meal prep containers or a casserole dish. Just adjust the baking time accordingly and remember to butter or oil your container well to prevent sticking.

Final Thoughts

This Meal Prep Breakfast Egg Muffins Recipe is one of my all-time favorites because it’s simple, satisfying, and totally customizable—perfect for anyone juggling busy mornings but wanting a wholesome start. I love knowing I have a tasty breakfast waiting for me in the fridge, and I think you’ll feel the same once you give it a try. So grab your ingredients, warm your oven, and let’s make your mornings a little brighter and way easier!

Print
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Meal Prep Breakfast Egg Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.5 from 87 reviews
  • Author: Villerius
  • Prep Time: 20 minutes
  • Cook Time: 20 minutes
  • Total Time: 40 minutes
  • Yield: 4 servings
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American

Description

This Meal Prep Breakfast Eggs recipe is a delicious and protein-packed way to start your day. It combines savory ground sausage or bacon with fresh vegetables, eggs, and cheese, baked to perfection for a convenient and satisfying meal. Ideal for meal prep, these egg cups or casserole portions can be made ahead and reheated throughout the week, saving time on busy mornings while delivering hearty nutrition.


Ingredients

Proteins

  • ½ pound ground sausage or chopped bacon
  • 8 large eggs
  • ¼ cup cottage cheese or Greek yogurt or half & half
  • ½ cup shredded cheddar cheese

Vegetables

  • ½ small onion, chopped
  • ½ bell pepper, chopped
  • ½ cup sliced mushrooms
  • 1 cup roughly chopped fresh spinach

Other Ingredients

  • 1 teaspoon avocado oil
  • ½ teaspoon garlic powder
  • ½ teaspoon paprika
  • ½ teaspoon salt
  • ½ teaspoon pepper


Instructions

  1. Preheat and sauté vegetables: Preheat your oven to 350ºF (175ºC). Heat 1 teaspoon of avocado oil in a large heavy-duty pan over medium-high heat. Add the ground sausage, chopped onion, bell pepper, and mushrooms to the pan and sauté for 3-4 minutes until the sausage is cooked through and the vegetables have softened. Then, stir in the roughly chopped fresh spinach and sauté for another few seconds until it begins to wilt.
  2. Prepare egg mixture: In a large mixing bowl, whisk together 8 large eggs, ¼ cup of cottage cheese (or Greek yogurt or half & half), ½ cup shredded cheddar cheese, and the seasonings: garlic powder, paprika, salt, and pepper. Add the cooked sausage and vegetable mixture to the eggs and stir until well combined.
  3. Assemble and bake: Grease 4 small glass oven-safe meal prep containers, muffin tins, or a large casserole dish. Divide the egg mixture evenly among them. Bake in the preheated oven for 20-25 minutes, or until a toothpick inserted into the center comes out clean and the eggs are fully set.
  4. Cool and store: Allow the baked egg dishes to cool to room temperature. Cover them and refrigerate for up to 5 days for meal prep convenience.
  5. Reheat and enjoy: To reheat, place the portion in the microwave and warm on high for 35-45 seconds or until heated through. Serve and enjoy a protein-rich breakfast to start your day.

Notes

  • If using bacon instead of sausage, cook the bacon first until crispy, then chop and add to the mixture to prevent soggy bits and impart a smoky flavor.
  • These egg dishes can be baked in individual muffin tins for easy grab-and-go portions or in a casserole dish for slicing.
  • You can substitute the cottage cheese with Greek yogurt or half & half depending on your preference for creaminess.
  • For a lower-fat option, opt for turkey sausage or reduce the cheese quantity as desired.
  • Store the prepared eggs in airtight containers in the refrigerator and consume within 5 days for optimal freshness and safety.

Nutrition

  • Serving Size: 1 serving (1/4 of recipe)
  • Calories: 320 kcal
  • Sugar: 2 g
  • Sodium: 520 mg
  • Fat: 23 g
  • Saturated Fat: 9 g
  • Unsaturated Fat: 11 g
  • Trans Fat: 0 g
  • Carbohydrates: 5 g
  • Fiber: 1 g
  • Protein: 22 g
  • Cholesterol: 370 mg

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